cellPACK specific software publications
Software 
  1. Johnson G, Autin L, Al-Alusi M, Goodsell D, Sanner M, Olson A. autoPACK. LGPL open-source, autoPACK.org, UCSF and The Scripps Research Institute, 2006–2013. autopack.org
  2. Johnson G, Autin L, Al-Alusi M, Goodsell D, Sanner M, Olson A. cellPACK. LGPL open-source, autoPACK.org, UCSF and The Scripps Research Institute, 2006–2013. cellpack.org
Peer Reviewed Publications 
  1. Johnson GT, Autin L, Al-Alusi M, Goodsell DS, Sanner MF, Olson AJ. cellPACK: a virtual mesoscope to model and visualize structural systems biology. Nat Methods. 2015 Jan; 12(1):85-91. Journal (nice) / PMC  PMID: 25437435. PMCID: PMC4281296 DOI: 10.1038/nmeth.3204
  2. Johnson, G.T., Goodsell, D. S., Autin, L., Forli, S., Sanner, M.F., Olson, A.J. 3D molecular models of whole HIV-1 virions generated with cellPACK. Faraday Discussions (2014), doi:10.1039/C4FD00017J. Journal (nice) / PMC (free-coming soon)


cellPACK related software publications
Software 
  1. Autin L, Johnson G, Sanner M, Olson A. Ubiquitous Python API (uPy). LGPL open-source, The Scripps Research Institute, 2012. upy.scripps.edu
  2. Autin L and Johnson G, Sanner M, Olson A. Embedded Python Molecular Viewer (ePMV). LGPL open-source, The Scripps Research Institute, 2010. epmv.scripps.edu
Peer Reviewed Publications 
  1. Johnson, G.T. & Hertig, S. A guide to the visual analysis and communication of biomolecular structural data. Nat Rev Mol Cell Biol 15, 690-8 (2014). doi:10.1038/nrm3874. Journal (nice) / PMC (free-coming soon)
  2. Autin L, Johnson G, Hake J, Olson A, Sanner M, uPy: A Ubiquitous CG Python API with Biological-Modeling Applications, IEEE Computer Graphics and Applications, vol. 32, no. 5, pp. 50-61, Sept.-Oct. 2012, doi:10.1109/MCG.2012.93. Journal (nice) / PMC (free-coming soon)
  3. Johnson, G.T., Autin, L., Goodsell, D.S., Sanner, M.F., Olson, A.J. (2011). ePMV Embeds Molecular Modeling into Professional Animation Software Environments. Structure 19, 293-303. Journal (nice) / PMC (free)
  4. Goodsell, D.S., and Johnson, G.T. (2007). Filling in the gaps: artistic license in education and outreach. PLoS Biol 5, e308. Journal (nice) / PMC (free)